Summer16

What are we doing today?
see the __[|Daily Schedule Summ16]__ (editable)

> Edit your Summer Student Schedules
Week 0: __**2-Jun Thursday**__ 5-Jun Sunday Week 1: 6-Jun Monday 12-JunSunday Week 2: 13-JunMonday 19-JunSunday Week 3: 20-JunMonday 26-JunSunday Week 4: 27-JunMonday 3-Jul Sunday Week 5: 4-Jul Monday 10-Jul Sunday Week 6: 11-Jul Monday 17-Jul Sunday Week 7: 18-Jul Monday 24-Jul Sunday (change?) Week 8: 25-Jul Monday __**29-Jul Friday**__

Summer Researchers:
Old School Mentors: Melissa, Grace
 * Mentors: ** Ana, Steven, Krupa, **ARI Mentors:** Andee F, Charina B,


 * Super Researcher: ** Steven

@https://docs.google.com/spreadsheets/d/1qPFVFrMbxfsPZck4FYEL1YNrDcGUZInv521vnCh7MN4/pubhtml https://docs.google.com/spreadsheets/d/1qPFVFrMbxfsPZck4FYEL1YNrDcGUZInv521vnCh7MN4/edit#gid=0 media type="custom" key="28579563"
 * ROSTER: **
 * VIEW **
 * EDIT**

Schedules
please enter your summer class schedule here (if you are also taking classes in the summer or have other conflicts with lab work): __ (Link ) __

Mentor Schedules
Want to know when the mentors will be on? - check here __(Link)__


 * Start Date ** : __Thursday__ June 2nd 2016 ---> **End Date**: ~ end of July sometime 2016

Group Meeting/Journal Club
once a week Location: GEA 100 ????? See Journal Club link on left hand side (lhs) menu Group Meeting Slides are in the Google Drive folder

Spaces
PAI 2.14 wet lab GEA - the fancy Human Ecology building PAI 3.04H Dr. B's office WEL 2.128 computer lab, WEL 2.144 computer lab Painter 1st floor - ice room, autoclave, big centrifuge Biotech lab - WEL 3.270 Robertus lab - WEL 5th floor Chemistry Storeroom - WEL 1st floor (basement) - supplies and dry ice Chemistry Electronics Shop - WEL 2nd floor (near computer lab) BioScience Storeroom - NHB 1.502 - supplies ICMB Core Facilities:
 * NHB glassware shop - next to BioSci storeroo
 * DNA Sequencing Facility (DASF) - MBB 1.426
 * ICMB Storeroom - MBB 1.426K (separate room for turning in invoice and for picking up items)
 * Can only pick up items from 9-12 AM and 2-5 PM

The Plan
We are going to work on our targets that we started picking in the Target Discovery Exercise. First, we will review those and see if they are good. Order overlap primers for our targets (we need these before we can start cloning for 'real') While we wait on the primers, we will express, purify and characterize YopH & FtHap enzymes - 2 current VDS targets. -- may also do NDM-1 and RpFabG

Then we will do some practice cloning procedures to teach you guys the new DNA cloning skills. Then we will proceed to work on cloning our targets Then we will express, purify and characterize our targets. Then we will perform enzyme activity assays to see if our targets work Then we will carry out inhibition assays

Lab Safety:
Have you complete your lab safety trainings ?

Tours and Fun Stuff

 * **Naturally Obsessed Viewing -** - when to watch this documentary?- Please fill out this form....TBD

TACC Tour at VisLab in ACES building __ON CAMPUS__ - @

 * (meet in lab before at to walk over)

TACC Machine room Tour - @

 * (meet in lab before - then we'll catch bus up to Pickle campus)
 * Fill out - **Medical Waiver**
 * Fill out - **Liability form**


 * Field Trip Form - Summer 2016**
 * || **Indemnification Agreement** || **Emergency Medical Authorization** ||
 * Jennifer A || Turned in || Turned in ||
 * Ethan B || Turned in || Turned in ||
 * Alex B || Turned in || Turned in ||
 * Timothy B || Turned in || Turned in ||
 * Shadi D || Turned in || Turned in ||
 * Bella D ||  ||   ||
 * Priya G || Turned in || Turned in ||
 * Marissa H || Turned in || Turned in ||
 * Paresh H ||  ||   ||
 * Sonia H ||  ||   ||
 * Akhila J ||  ||   ||
 * Gayeong L || Turned in || Turned in ||
 * Josue L || Turned in || Turned in ||
 * Laura L ||  ||   ||
 * Naren M ||  ||   ||
 * Paige M || Turned in || Turned in ||
 * Aparna P || Turned in || Turned in ||
 * Elisa P || Turned in || Turned in ||
 * Shrestha S || Turned in || Turned in ||
 * My Q ||  ||   ||
 * Amy Z || Turned in || Turned in ||

== GASF (Genome Sequencing and Analysis Facility) Tour in MBB 4.102 (not done) ==
 * Paper to read before the tour: NGS_Mardis.pdf
 * Algae Lab Tour : Meet in PAI 2.14 - then will walk over to BIO 320 (not done)

Skills List:
Target Discovery PCR (primer overlap) Restriction Enzyme Digest Cloning Plasmid Midi-Prep DNA Sequencing Protein Expression, Purification, Characterization (Large scale) FPLC Enzyme assays

Things to Keep in Mind
Wikispaces no like it when you have more than 3 windows open at a time! It be slow. Store reagents at the proper temperature & in the right location (e.g. correct freezer box) Label all reagents (tubes, boxes, liguids, powders) with VDS and Date (also include your initials if it is yours) Write down everything that you do in lab into your lab notebook Clean your area when done and return reagents and materials to their 'homes'